How do I connect Seqera to Operator?

You authorize Seqera once from your Operator dashboard. Operator holds the connection and refreshes the access token for you, so your agent keeps working with Seqera without you signing in again.

Can my agent pull and update data in Seqera?

Yes. It can read records, write new ones, and answer questions about what is stored. Point it at Seqera and ask for a figure or a list, or have it keep a table in step with another app you have connected, all in plain language.

Do I need to write code or manage Seqera API keys?

No code and no API keys. You authorize Seqera through a normal sign in and Operator handles the connection, so there is nothing to wire up or host.

Can my agent use Seqera together with my other apps?

Yes. The same agent reaches every app you connect, so it can move between Seqera and tools like Gigasheet, Nasa, Api ninjas in one job, reading from one and acting in another without you wiring anything between them.

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Connect Seqera to OpenClaw on Operator.io

Seqera Platform is a unified command center for orchestrating, running, and monitoring Nextflow pipelines at scale. Use it for seamless, centralized management of data analysis workflows across any cloud or on-prem compute environment.

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Automate Seqera with AI

Operator runs your personal agent on OpenClaw, the open source agent framework, and points it straight at Seqera. You message the agent on Telegram or Discord, tell it what you need in plain language, and it operates Seqera on its own, running actions like create wave container, get organization details, get service info.

Your agent reaches Seqera directly or through connectors like Composio MCP and Pipedream MCP, which handle the sign in and token refresh for you, so there is nothing to wire up and no API keys to paste.

What your agent can do with Seqera

Your agent can call any of these Seqera actions by name as part of a larger task. Ask for the outcome you want and it picks the right ones.

Create Wave Container

Tool to submit a request to Wave for accessing a private container registry or building a container image on-the-fly. Use when you need to provision containers via Wave with Dockerfile, Conda recipe, or package specifications. Returns th...

Get Organization Details

Tool to retrieve detailed information about a specific organization.

Get Service Info

Tool to retrieve information about the Seqera API service. Use when you need to check the service version and commit ID for troubleshooting.

Get User Info

Tool to retrieve information about the authenticated user. Use when you need to fetch details of the current user after authentication.

Get Wave Build Logs

Tool to get logs for a container build by build ID. Use when you need to troubleshoot or inspect the build process of a Wave container.

Get Wave Build Status

Tool to retrieve the status of a Wave container build by build ID. Use when you need to check if a container build is completed and whether it succeeded.

Inspect Wave Container

Tool to inspect container image metadata via Wave. Use when you need registry, manifest, digest, configuration, and OCI compatibility information about a container image.

List Action Event Types

Tool to list supported action event types. Use when you need to discover available triggers for pipelines, optionally filtered by workspace.

List Compute Environments

Tool to retrieve a list of compute environments. Use when you need to page, sort, or filter compute environments accessible to your account.

List Organizations

Tool to list all organizations. Use after authentication to retrieve accessible Seqera organizations.

List Pipelines

Tool to list all pipelines accessible to the authenticated user. Use when you need to browse pipelines with optional pagination, sorting, or search filters.

List Workflows

Tool to list workflows. Use when you need to retrieve workflows filtered by workspace and paginated.

Validate Action Name

Tool to validate action name. Use when you need to confirm if an action name is valid and available before creating an action. Returns validation status with details.

Validate Pipeline Name

Tool to validate a pipeline name. Use when you need to check if a given pipeline name is valid and available before creating or updating one.

How to connect Seqera

You authorize Seqera once from your dashboard. Operator holds the connection and refreshes the access tokens on its own, so your agent keeps working with Seqera without you signing in again. The same setup unlocks every other app your agent can reach, so you only do it once.

When you are ready, the get started guide walks through standing up your OpenClaw agent.

Common questions about Seqera

How do I connect Seqera to Operator?: You authorize Seqera once from your Operator dashboard. Operator holds the connection and refreshes the access token for you, so your agent keeps working with Seqera without you signing in again.
Can my agent pull and update data in Seqera?: Yes. It can read records, write new ones, and answer questions about what is stored. Point it at Seqera and ask for a figure or a list, or have it keep a table in step with another app you have connected, all in plain language.
Do I need to write code or manage Seqera API keys?: No code and no API keys. You authorize Seqera through a normal sign in and Operator handles the connection, so there is nothing to wire up or host.
Can my agent use Seqera together with my other apps?: Yes. The same agent reaches every app you connect, so it can move between Seqera and tools like Gigasheet, Nasa, Api ninjas in one job, reading from one and acting in another without you wiring anything between them.

More apps to automate

Apps your agent runs alongside Seqera, or browse all integrations.

Put your agent on Seqera

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